Publications

2017


  • Amos, M., Goñi-Moreno, A. Cellular Computing and Synthetic BiologyIn Computational Matter, Stepney, S., Rasmussen, S. & Amos, M. (Editors), Springer. (in press)
  • Goñi-Moreno, A., Wipat, A., Krasnogor, N. CSBB: synthetic biology research at Newcastle University. Biochemical Society Transactions 45(3) 781-783 (2017) Web.
  • Goñi-Moreno, A., Benedetti, I., Kim, J., de Lorenzo, V. Deconvolution of gene expression noise into spatial dynamics of transcription factor-promoter interplay. ACS Synthetic Biology (2017) Web.
2016
  • Chavarria, M., Goñi-Moreno, A., de Lorenzo, V. & Nikel, P. A metabolic widget adjusts the phosphoenolpyruvate-dependent fructose influx in Pseudomonas putida KT2240. mSystems (2016) Web
  • Rodriguez-Espeso, D., Martínez García, E., de Lorenzo, V., & Goñi-Moreno, A. Physical forces shape group identity of swimming Pseudomonas putida cells. Frontiers in Microbiology, 7, 1437 (2016) Web
  • Goñi-Moreno, A., Kim, J. & de Lorenzo, V. CellShape: a user-friendly image analysis tool for quantitative visualization of bacterial cell factories inside. Biotechnology Journal. Web (2016)
  • Goñi-Moreno, A. Carcajona, M., Kim, J., Martínez-García, E. Amos, M & de Lorenzo, V. An implementation-focused bio/algorithmic workflow for synthetic biology. ACS Synthetic Biology. (2016) Web
2015

  • Goñi-Moreno, A. & Amos, M. DiSCUS: A simulation platform for conjugation computing. In Calude, C.S. & Dineen, M.J. (Eds), Unconventional and Natural Computation (UCNC 2015), Auckland, New Zealand, August 31-September 4, 2015. Springer, p.p. 181-191 (2015)
  • Nikel PI, Romero-Campero FJ, Zeidman JA, Goñi-Moreno Á, de Lorenzo V. 2015. The glycerol-dependent metabolic persistence of Pseudomonas putida KT2440 reflects the regulatory logic of the GlpR repressor. mBio 6(2):e00340-15. doi:10.1128/mBio.00340-15.(2015) Web
2014

  • Martínez-García, E. Aparicio, T. Goñi-Moreno, A. Fraile, A. de Lorenzo, V. SEVA 2.0: an update of the Standard European Vector Architecture for de-/re-construction of bacterial functionalities. Nucleic Acids Research. doi: 10.1093/nar/gku1114 (2014) Web
  • Goñi-Moreno, A. On genetic logic circuits: forcing digital electronic standards?. Memetic Computing. 10.1007/s12293-014-0136-8 (2014) Web

2013

  • Goñi-Moreno, A., Amos, M., de la Cruz, F. Multicellular computing using conjugation for wiring .PLoS ONE 8(6): e65986. doi:10.1371/journal.pone.0065986 (2013).
2012

  • Goñi-Moreno, A. & Amos, M. A reconfigurable NAND/NOR genetic logic gate. BMC Systems Biology, 6:126. doi: 10.1186./1752-0509-6-126 (2012)
  • Goñi-Moreno, A. & Amos, M.  Continuous computation in engineered gene circuits. BioSystems 109:1, p.p. 52-56, doi: 10.1016/j.biosystems.2012.02.001 (2012)
  • Goñi-Moreno ABacterias como micromaquinas. Investigacion y ciencia. ISSN 0210-136X. N 430, pags 11-13. (2012)
2011

  • Goñi-Moreno, A. & Amos, M. Model for a population-based microbial oscillator.  BioSystems 105(3): 286-294. DOI: 10.1016/j.biosystems. (2011)
  • Goñi-Moreno A, Redondo-Nieto M, Arroyo F, Castellanos J. Biocircuit design through engineering bacterial logic gates. Natural Computing, 10(1): 119-127, DOI: 10.1007/s11047-010-9184-2 (2011)
2010

  • Navarro J, Goñi-Moreno A, Marijuán P.C. Varieties of Biological Information: A molecular recognition approach to systems biology and bioinformatics. International Conference on Natural Information Technologies, Madrid 28Sep-02Oct. Published by International Journal Information Technologies & Knowledge, 56-66. (2010)
  • Goñi-Moreno A, Amos M. Engineered microbial communication for population-level behaviour. Artificial Life XII. Proceedings of the 12th International Conference on the Synthesis and Simulation of Living Systems, Denmark. Harold Fellermann, Mark Dörr, Martin M. Hanczyc, Lone Ladegaard Laursen, Sarah Maurer, Daniel Merkle, Pierre-Alain Monnard, Kasper Stoy and Steen Rasmussen (Eds.), MIT Press 184-185. (2010)
  • Arteta A, Arroyo A, Goñi-Moreno A. Calculating maximal multisets of objects by using RAM as support. 15th International Symposium on Artificial Life and Robotics AROB'10. Japan. (OS):28-31. (2010)
2009

  • Goñi-Moreno A, Cordero P. Conditional development of bacterial based swarm intelligent systems and real biological manipulation. Proc of Computer Science and Technologies conference CSIT'O9. Armenia, 222-225. (2009)
  • Cordero P, Goñi-Moreno A, Castellanos J. Using directed evolution techniques to solve hard combinatorial problems. Proc of Computer Science and Technologies conference CSIT'O9. Armenia, 225-229.(2009)
  • Rio T, Cisneros FJ, Goñi-Moreno A, Castellanos J. Simulation of a DNA denaturation process. Proc. of the 7th ACS/IEEE International Conference on Computer Systems and Applications. 737-742. (2009)
  • De la Peña A, Cisneros FJ, Goñi-Moreno A, Castellanos J. DNA electrophoresis simulation. Lecture Notes in Computer Science. 5518: 585-588. (2009)
  • Goñi-Moreno A, Cordero P. Global memory structure for ant colony optimization algorithms. Intelligent Engineering. 3:116-122. (2009).
  • Arteta A, Goñi-Moreno A, Castellanos J. Analysis of P-Systems under a multiagent system perspective. Intelligent Processing. 3: 117-128.(2009)
2008

  • Goñi-Moreno A, Cisneros FJ, Cordero P, Castellanos J. A DNA codification for genetic algorithms simulation. Advance Research in Artificial Intelligence. 2:69-74. (2008)
  • Goñi-Moreno A. Solving Travelling Salesman Problem in a simulation of genetic algorithms with DNA. Information Theories and Applications. 15(4): 357-363. (2008).
  • Baños R, Cordero P, Goñi-Moreno A, Castellanos J. Simulation of a DNA renaturalization process. International Conference on Metaheuristics and Nature Inpired Computing META'08. (2008)
2007

  • Goñi-Moreno A. Crossover operator in DNA simulation of genetic algorithms. Proc. of the 5th International Conference Information Research and Applications I-TECH'07. 1: 74-79. (2007)